UGENE Alternatives

    UGENE is described as 'is free open-source cross-platform bioinformatics software' and is an app in the Education & Reference category. There are more than 10 alternatives to UGENE for a variety of platforms, including Windows, Linux, Mac, Online / Web-based and Self-Hosted solutions. The best alternative is Rasmol, which is both free and Open Source. Other great apps like UGENE are Clustal Omega (Free), Geneious (Paid), BioEdit (Free) and CLC Genomics Workbench (Paid).

    This page was last updated Aug 21, 2021

      • FreeOpen Source
      • Mac
      • Windows
      • Linux
      RasMol is a computer program written for molecular graphics visualization intended and used primarily for the depiction and exploration of biological macromolecule structures, such as those found in the Protein Data Bank.
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    1. Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
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    2. Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!
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      • FreeProprietary
      • Windows
      BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.

      Discontinued

      The program is no longer maintained. Last version, 7.2.5, released in December 2013, can be still downloaded from the official website.

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    3. Complete bioinformatics toolkit for a wide range of genomics analysis needs, including transcriptomics, variant calling, epigenomics, metagenomics, comparative genomics and many more.
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      • Free PersonalProprietary
      • Mac
      • Windows
      • Linux
      SnapGene Viewer is revolutionary software that allows molecular biologists to create, browse, and share richly annotated DNA sequence files up to 1 Gb in length.
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      • FreeProprietary
      • Mac
      • Windows
      • Linux
      Tree drawing software for Apple Macintosh and Windows.
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      • FreeProprietary
      • Windows
      • Linux
      Ridom TraceEdit is a cross-platform graphical DNA trace viewer and editor. TraceEdit displays the chromatogram files from Applied Biosystems automated sequencers and files in the Staden SCF format.
      • FreeProprietary
      • Windows
      A full featured multiple sequence alignment editor, analyser and shading utility for Windows. • Data analysis and visualization • Score assisted manual alignment • Paginated printouts • Windows based • Highly configurable • Exported figures • Phylognetic tree support
      • FreeOpen Source
      • Mac
      • Windows
      • Linux
      • Java
      Archaeopteryx is a software tool for the visualization, analysis, and editing of potentially large and highly annotated phylogenetic trees. Archaeopteryx (the successor to ATV) is entirely written in the Java programming language (it is based on the forester libraries).
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    Showing 10 of 24 alternatives