UGENE Alternatives
UGENE is described as 'Is free open-source cross-platform bioinformatics software' and is an app in the education & reference category. There are more than 25 alternatives to UGENE for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best UGENE alternative is AliView, which is both free and Open Source. Other great apps like UGENE are BioEdit, Chromas, Genophore and Geneious.
- Free • Open Source
- 4 AliView alternatives
AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use, not so bloated and hopefully to your liking.
License model
- Free • Open Source
Country of Origin
Sweden
EU
Platforms
- Mac
- Windows
- Linux
AliView Features
- 28 BioEdit alternatives
BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.
License model
- Free • Proprietary
Platforms
- Windows
DiscontinuedThe program is no longer maintained. Last version, 7.2.5, released in December 2013, can be still downloaded from the official website.
- 27 Chromas alternatives
Two software applications are available from Technelysium: Chromas and ChromasPro.
License model
- Freemium • Proprietary
Country of Origin
Australia
Platforms
- Windows
Chromas Features
Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.
License model
- Free Personal • Proprietary
Platforms
- Online
- Self-Hosted
- Software as a Service (SaaS)
Genophore Features
- 28 Geneious alternatives
Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!
License model
- Paid • Proprietary
Platforms
- Mac
- Windows
- Linux
Geneious Features
RasMol is a computer program written for molecular graphics visualization intended and used primarily for the depiction and exploration of biological macromolecule structures, such as those found in the Protein Data Bank.
License model
- Free • Open Source
Platforms
- Mac
- Windows
- Linux
License model
- Free • Proprietary
Platforms
- Mac
- Windows
- Linux
Ridom TraceEdit is a cross-platform graphical DNA trace viewer and editor. TraceEdit displays the chromatogram files from Applied Biosystems automated sequencers and files in the Staden SCF format.
License model
- Free • Proprietary
Platforms
- Windows
- Linux
A full featured multiple sequence alignment editor, analyser and shading utility for Windows.
License model
- Free • Proprietary
Platforms
- Windows
Archaeopteryx is a software tool for the visualization, analysis, and editing of potentially large and highly annotated phylogenetic trees.
License model
- Free • Open Source
Platforms
- Mac
- Windows
- Linux
- Java
License model
- Free • Proprietary
Platforms
- Mac
- Windows
- Linux
TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, .
License model
- Free • Open Source
Platforms
- Mac
- Windows
- Linux