UGENE Alternatives

UGENE is described as 'Is free open-source cross-platform bioinformatics software' and is an app in the education & reference category. There are more than 25 alternatives to UGENE for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best UGENE alternative is VectorBee, which is free. Other great apps like UGENE are AliView, BioEdit, Chromas and Genophore.

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Alternatives list

  1. TreeView X icon
     1 like

    TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, .

    Cost / License

    • Free
    • Open Source

    Platforms

    • Mac
    • Windows
    • Linux
     
  2. SnapGene Viewer is revolutionary software that allows molecular biologists to create, browse, and share richly annotated DNA sequence files up to 1 Gb in length.

    32 SnapGene Viewer alternatives

    Cost / License

    • Free Personal
    • Proprietary

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
     
  3. PDRAW32 icon
     1 like

    Scientific software for the molecular biologist. Performs virtual DNA cloning, analyses DNA for restriction enzymes, homing enzymes and primer sites, dam and dcm methylation sites, finds and translates open reading frames. Calculates annealing temperatures for PCR.

    Cost / License

    • Freemium
    • Proprietary

    Platforms

    • Mac
    • Windows
    • Linux
     
  4. Serial Cloner icon
     2 likes

    Serial Cloner is a Molecular Biology software.

    It provides tools with an intuitive interface that assists you in DNA cloning, sequence analysis and visualization.

    Cost / License

    • Free
    • Proprietary

    Application type

    Alerts

    • Discontinued

    Platforms

    • Mac
    • Windows
    • Linux
     
  5. CLC bio icon
     Like

    DNA analysis for the workbench.

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Windows
     
  6. The DNASTAR Lasergene package is the most robust of our software offerings, and includes all of the applications from our genomics, structural biology, molecular biology, and cloning suites.

    24 DNASTAR Lasergene alternatives

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Mac
    • Windows
    • Linux
     
  7. Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.

    Cost / License

    • Free
    • Proprietary

    Platforms

    • Online
     
  8. Mendelgen icon
     3 likes

    Mendelgen is an online DNA vector editing and manipulation tool. It offers features like MSA alignment, codon optimization, feature detection, and more. It's wrapped in a beautiful and intuitive design to make your experience easy and enjoyable.

    Cost / License

    • Free
    • Proprietary

    Application type

    Platforms

    • Online
     
  9.  Like

    Boxshade is a program for creating good-looking printouts from alignments of multiple protein or DNA sequences. The program does no alignment by itself, it takes as input a file preprocessed by a multiple alignment program or a multiple sequence editor, such as ClustalOmega.

    Cost / License

    Platforms

    • Mac
    • Windows
    • Linux
    • Online
     
  10. Complete bioinformatics toolkit for a wide range of genomics analysis needs, including transcriptomics, variant calling, epigenomics, metagenomics, comparative genomics and many more.

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Mac
    • Windows
    • Linux
     
  11. RasTop icon
     Like

    RasTop is a molecular visualization software adapted from the program RasMol, which was initially developed by Roger Sayle. RasTop is particularly adapted for educational purposes and for the rapid analysis of macromolecules at the bench.

    Cost / License

    • Free
    • Open Source

    Platforms

    • Mac
    • Windows
    • Linux
    • Wine
     
  12. QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Mac
    • Windows
    • Linux
     
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