Clustal X Alternatives

Clustal X is described as 'Multiple sequence alignment software' and is an app. There are eight alternatives to Clustal X for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best Clustal X alternative is AliView, which is both free and Open Source. Other great apps like Clustal X are BioEdit, Genophore, UGENE and GeneDoc.

  • FreeProprietary
  • ...

Multiple sequence alignment software.

More about Clustal X
Clustal X alternatives page was last updated Feb 3, 2023
  1. AliView icon
     3 likes

    AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use, not so bloated and hopefully to your liking.

    4 AliView alternatives
    Unlimited mouse wheel zoom in/out to see whole alignment

    License model

    • FreeOpen Source

    Platforms

    • Mac
    • Windows
    • Linux

    AliView Features

    1.  Bioinformatics
    AliView iconClustal X Icon

    AliView VS Clustal X

    Is AliView a good alternative to Clustal X?
     
    • AliView is the most popular Windows, Mac & Linux alternative to Clustal X.

    • AliView is the most popular Open Source & free alternative to Clustal X.

    • AliView is Free and Open SourceClustal X is Free and Proprietary
  2. BioEdit icon
     2 likes

    BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.

    28 BioEdit alternatives
    BioEdit screenshot 1

    License model

    • FreeProprietary

    Platforms

    • Windows
    Discontinued

    The program is no longer maintained. Last version, 7.2.5, released in December 2013, can be still downloaded from the official website.

    BioEdit iconClustal X Icon

    BioEdit VS Clustal X

    Is BioEdit a good alternative to Clustal X?
     
  3. Genophore icon
     2 likes

    Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.

    27 Genophore alternatives
    Genophore landing page

    License model

    • Free PersonalProprietary

    Platforms

    • Online
    • Self-Hosted
    • Software as a Service (SaaS)

    Genophore Features

    1.  Bioinformatics
    2.  Online collaboration
    3.  Cloud based
    Genophore iconClustal X Icon

    Genophore VS Clustal X

    Is Genophore a good alternative to Clustal X?
     
    • Genophore is the most popular Web-based, SaaS & Self-Hosted alternative to Clustal X.

    • Genophore is Free Personal and ProprietaryClustal X is Free and Proprietary
  4. UGENE icon
     3 likes

    UGENE is free open-source cross-platform bioinformatics software.

    25 UGENE alternatives
    UGENE screenshot 1

    License model

    • FreeOpen Source

    Platforms

    • Mac
    • Windows
    • Linux

    UGENE Features

    1.  Bioinformatics
    UGENE iconClustal X Icon

    UGENE VS Clustal X

    Is UGENE a good alternative to Clustal X?
     
  5. GeneDoc icon
     1 like

    A full featured multiple sequence alignment editor, analyser and shading utility for Windows.

    6 GeneDoc alternatives
    GeneDoc screenshot 1

    License model

    • FreeProprietary

    Platforms

    • Windows
    GeneDoc iconClustal X Icon

    GeneDoc VS Clustal X

    Is GeneDoc a good alternative to Clustal X?
     
  6. Geneious icon
     1 like

    Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!

    28 Geneious alternatives
    Geneious screenshot 1

    License model

    Platforms

    • Mac
    • Windows
    • Linux

    Geneious Features

    1.  Sequence Analysis
    2.  Visual Editing
    Geneious iconClustal X Icon

    Geneious VS Clustal X

    Is Geneious a good alternative to Clustal X?
     
    • Geneious is the most popular commercial alternative to Clustal X.

    • Geneious is Paid and ProprietaryClustal X is Free and Proprietary
  7. Clustal Omega icon
     1 like

    Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.

    3 Clustal Omega alternatives

    License model

    • FreeProprietary

    Platforms

    • Online

    Clustal Omega Features

    1.  Ad-free
    2.  Sequence Analysis
    3.  Bioinformatics
    Clustal Omega iconClustal X Icon

    Clustal Omega VS Clustal X

    Is Clustal Omega a good alternative to Clustal X?
     
  8. CLC Main Workbench icon
     Like this app

    QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.

    28 CLC Main Workbench alternatives
    CLC Main Workbench screenshot 1

    License model

    Platforms

    • Mac
    • Windows
    • Linux

    CLC Main Workbench Features

    1.  Bioinformatics
    2.  Sequencing
    CLC Main Workbench iconClustal X Icon

    CLC Main Workbench VS Clustal X

    Is CLC Main Workbench a good alternative to Clustal X?
     
8 of 8 Clustal X alternatives