Clustal X Alternatives

Clustal X is described as 'Multiple sequence alignment software' and is an app. There are eight alternatives to Clustal X for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best Clustal X alternative is AliView, which is both free and Open Source. Other great apps like Clustal X are Genophore, UGENE, GeneDoc and BioEdit.

Clustal X

Free • Proprietary

Multiple sequence alignment software.

More about Clustal X

Clustal X alternatives page was last updated

AliView
Is this is a good alternative?
Yes
No
Free • Open Source
Mac
Windows
Linux
4 AliView alternatives
AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use, not so bloated and hopefully to your liking.
- - AliView is the most popular Windows, Mac & Linux alternative to Clustal X.
- - AliView is the most popular Open Source & free alternative to Clustal X.
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AliView Features
Bioinformatics
Genophore
Is this is a good alternative?
Yes
No
Free Personal • Proprietary
Online
Self-Hosted
Software as a Service (SaaS)
27 Genophore alternatives
Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.
- - Genophore is the most popular Web-based, SaaS & Self-Hosted alternative to Clustal X.
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Genophore Features
Bioinformatics
Online collaboration
Cloud based
UGENE
Is this is a good alternative?
Yes
No
Free • Open Source
Mac
Windows
Linux
25 UGENE alternatives
UGENE is free open-source cross-platform bioinformatics software.
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UGENE Features
Bioinformatics
GeneDoc
Is this is a good alternative?
Yes
No
Free • Proprietary
Windows
6 GeneDoc alternatives
A full featured multiple sequence alignment editor, analyser and shading utility for Windows.
GeneDoc has no features, suggest some!
BioEdit
Is this is a good alternative?
Yes
No
Free • Proprietary
Windows
28 BioEdit alternatives
BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.
BioEdit has no features, suggest some!
Discontinued
The program is no longer maintained. Last version, 7.2.5, released in December 2013, can be still downloaded from the official website.
Geneious
Is this is a good alternative?
Yes
No
Paid • Proprietary
Mac
Windows
Linux
28 Geneious alternatives
Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!
- - Geneious is the most popular commercial alternative to Clustal X.
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Geneious Features
Sequence Analysis
Visual Editing
Clustal Omega
Is this is a good alternative?
Yes
No
Free • Proprietary
Online
3 Clustal Omega alternatives
Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
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Clustal Omega Features
1. Ad-freeClustal Omega doesn't contain any form of external advertising.
Sequence Analysis
Bioinformatics
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CLC Main Workbench
Is this is a good alternative?
Yes
No
Paid • Proprietary
Mac
Windows
Linux
28 CLC Main Workbench alternatives
QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.
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CLC Main Workbench Features
Bioinformatics
Sequencing

8 of 8 Clustal X alternatives

Clustal X Alternatives

AliView Features

Genophore Features

UGENE Features

Geneious Features

Clustal Omega Features

CLC Main Workbench Features