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Clustal X Alternatives

Clustal X is described as 'Multiple sequence alignment software' and is an app. There are seven alternatives to Clustal X for a variety of platforms, including Windows, Linux, Mac, Online / Web-based and Self-Hosted solutions. The best alternative is Clustal Omega, which is free. Other great apps like Clustal X are GeneDoc, UGENE, BioEdit and Geneious.

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  • FreeProprietary
  • Mac
  • Windows
  • Linux

Multiple sequence alignment software.

Learn more about Clustal X

  1. Clustal Omega icon

    Clustal Omega

    • FreeProprietary
    • Online

    Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.

    No screenshots yet
  2. GeneDoc icon

    GeneDoc

    • FreeProprietary
    • Windows

    A full featured multiple sequence alignment editor, analyser and shading utility for Windows.

    Screenshot


  3. UGENE icon

    UGENE

    • FreeOpen Source
    • Mac
    • Windows
    • Linux

    UGENE is free open-source cross-platform bioinformatics software.

    Screenshot
  4. BioEdit icon

    BioEdit

    • FreeProprietary
    • Windows

    BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.

    Discontinued

    The program is no longer maintained. Last version, 7.2.5, released in December 2013, can be still downloaded from the official website.

    Screenshot
  5. Geneious icon

    Geneious

    • Mac
    • Windows
    • Linux

    Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!

    Screenshot


  6. Genophore icon

    Genophore

    • Free PersonalProprietary
    • Online
    • Self-Hosted
    • Software as a Service (SaaS)

    Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.

    Genophore landing page
  7. CLC Main Workbench icon

    CLC Main Workbench

    • Mac
    • Windows
    • Linux

    QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.

    Screenshot
Showing 7 of 7 alternatives