Clustal X Alternatives
Clustal X is described as 'Multiple sequence alignment software' and is an app. There are eight alternatives to Clustal X for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best Clustal X alternative is AliView, which is both free and Open Source. Other great apps like Clustal X are BioEdit, Genophore, UGENE and GeneDoc.
Alternatives list
- 30 BioEdit alternatives
BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.


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Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.
Cost / License
- Free Personal
- Proprietary
Platforms
- Online
- Self-Hosted
- Software as a Service (SaaS)



A full featured multiple sequence alignment editor, analyser and shading utility for Windows.
Cost / License
- Free
- Proprietary
Platforms
- Windows

- 30 Geneious alternatives
Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!
Cost / License
- Paid
- Proprietary
Platforms
- Mac
- Windows
- Linux


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Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
Cost / License
- Free
- Proprietary
Platforms
- Online
QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.
Cost / License
- Paid
- Proprietary
Platforms
- Mac
- Windows
- Linux

































