• Publish or Perish icon
  • V
  • paper-digest icon
  • DocFetcher icon
  • Docear icon
  • +6

Academic Research and Writing Tools

amritkarmacharyaamritkarmacharya11 appsUpdated
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I used these tools during my thesis. There is a lot of information to be processed and without these tools it would be a daunting task.

  1. Publish or Perish (PoP) uses Scopus, Crossref, Google Scholar, Microsoft Academic, and Web of Science queries to obtain citation information, which is then analysed and converted to a variety of metrics (see Appendix).

    Cost / License

    • Free
    • Proprietary

    Platforms

    • Windows
    amritkarmacharyaamritkarmacharya’s note

    Google scholar is great but when you want a deeper insight into your field. the web version feels limited and google scholar doesn't provide api. I used this to list out relevant articles and save them. Then i used vosviewer for finding the cluster of people with high research and high ranking keywords. These helped me get better results afterwards. P.S. the default search for google scholar is set at 500. But i think google started limiting at 200 (v7.12). After that the result was very slow, better change it to 200.

  2. VOSviewer is a software tool for constructing and visualizing bibliometric networks. These networks may for instance include journals, researchers, or individual publications, and they can be constructed based on co-citation, bibliographic coupling, or co-authorship relations.

    Cost / License

    • Free
    • Open Source

    Platforms

    • Mac
    • Windows
    • Linux
    VOSviewer screenshot 1
    VOSviewer screenshot 1
    VOSviewer screenshot 2
    amritkarmacharyaamritkarmacharya’s note

    Use this to visualize the research field. Data can be captured from Web of Science, Scopus. In my field Scholar was better.

  3. Reduce reading time to 3 minutes!. Artificial Intelligence summarizes academic articles for you.

    Cost / License

    • Free
    • Proprietary

    Platforms

    • Online
    paper-digest screenshot 1
    paper-digest screenshot 1
    amritkarmacharyaamritkarmacharya’s note

    Although it is in the testing stage, it does help to reduce reading time of a paper. if a paper is longer than 10 pages, put it through digest first. this will identify important lines. Then search for those lines and understand their meaning and context.

  4. DocFetcher is an Open Source desktop search application: It allows you to search the contents of files on your computer. — You can think of it as Google for your local files. The application runs on Windows, Linux and macOS, and is made available under the Eclipse Public License.

    Cost / License

    • Free
    • Open Source

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    Filter panel and preview panel enabled
    Filter panel and preview panel enabled
    No extra fluff
    +2
    Preview panel enabled
    amritkarmacharyaamritkarmacharya’s note

    Excellent to search contents inside files and pdfs.

  5. Docear icon
     Like

    Docear is a unique solution to academic literature management, which helps you organizing, creating, and discovering academic literature. The 3 most distinct features are:

    Cost / License

    • Free
    • Open Source

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    • Online
    Docear screenshot 1
    Docear screenshot 1
    Docear screenshot 2
    +7
    Docear screenshot 3
    amritkarmacharyaamritkarmacharya’s note

    It is a swiss knife. Mind mapping + Annotation importing + reference management. Annotation Importing was the best feature, Mendeley or qiqqa can also annotate but it has to be done in the app, but not here. Any pdf reader can annotate so I don't have to read all papers. When my supervisor sends me highlighted pdf, they can be imported directly. Reference management is also very easy and docear4word makes citation easier. The best feature is Mind Mapping, Helps to keep ideas and facts separate but interconnected. I can really see how an idea is developing and if anyone else has done similar thing. I would have preferred Sankey more than mind map but haven't found good Sankey software. the file .mm is also an XML so many tweaks can be done with a text editor (e.g. searching in the file, builtin search is a bit difficult. text editors have better searching features). I have tried mendeley, zotero, qiqqa also and i find this the best. Although, because of its discontinued development, qiqqa might also be a good option.

  6. PDF-XChange Viewer is an alternative viewer for PDF files that enables you to view and annotate PDF files. You can add text, sticky notes, and other annotations and save them to the file, which will be compatible with the standard Adobe Acrobat Reader icon Adobe Acrobat Reader.

    Cost / License

    • Freemium
    • Proprietary

    Application type

    Platforms

    • Windows
    • PortableApps.com
    PDF-XChange Viewer screenshot 1
    amritkarmacharyaamritkarmacharya’s note

    Basically it is a companion for docear as it fulfils all the recommended features for docear. Adobe is also good, but in free versions, this has more features.

  7. ProcrastriTracker is a time tracking tool that automatically tracks what applications and documents you use, and allows you to view statistics on your usage in great detail. It is written to be small and non-intrusive.

    Cost / License

    • Free
    • Open Source

    Application type

    Platforms

    • Windows
    ProcrastiTracker screenshot 1
    amritkarmacharyaamritkarmacharya’s note

    Distraction is an enemy. Many times I have found myself in youtube or in amazon. Giving enough time to research is vital. There are other tools which can enforce discipline, but i outgrow them eventually. This one is like a nice friend who will just track active programs and at the end of day you can see how you spent time. Self imposed discipline is better than external.

  8. Open-source app tracking time on devices, maintaining privacy and versatility, with features like productivity insights, Pomodoro timers, and local data storage.

    Cost / License

    • Free
    • Open Source

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    • Android
    • Android Tablet
    • Self-Hosted
    • Google Chrome
    • Rust
    • Python
    • Chromium
    • Mozilla Firefox
    ActivityWatch screenshot 1
    ActivityWatch screenshot 2
    ActivityWatch screenshot 3
    amritkarmacharyaamritkarmacharya’s note

    Usefulness is same as Procastitracker but these two have different interfaces. I like procastitracker as i am more used to it, but AW is also good.

  9. TeXstudio icon
     Like

    TeXstudio is an integrated environment for writing LaTeX documents. Our goal is to make writing LaTeX as easy and comfortable as possible. Therefore TeXstudio has numerous features like syntax-highlighting, integrated viewer, reference checking and various assistants.

    Cost / License

    • Free
    • Open Source

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    • Flathub
    Main interface (2024) on KDE desktop
    Inline Checking
    Error Highlighting
    +4
    example.tex on Mac
    amritkarmacharyaamritkarmacharya’s note

    Tex studio is easy to use and manage. It shows sections in files and links the include files and subtitles. This was the goto feature that I did not find in other tex editors.

  10. Overleaf icon
     Like

    Overleaf, formerly WriteLaTeX, is a collaborative writing and publishing system that makes the whole process of producing academic papers much quicker for both authors and publishers.

    Cost / License

    • Freemium
    • Open Source

    Application type

    Platforms

    • Online
    • Self-Hosted
    Templates
    Main app
    amritkarmacharyaamritkarmacharya’s note

    Overleaf is limited in many areas but i found it best for sharing with supervisors. They could provide comment and feedback directly in tex file. Others can also directly collaborate, this is very useful when latex throws errors and you need help from an expert friend.

  11. An AI-powered proofreading tool supports over 20 languages, offering free and premium versions with extensive grammar checks across multiple apps.

    Cost / License

    • Paid
    • Open Source

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    • Online
    • iPhone
    • iPad
    • Microsoft Edge
    • ONLYOFFICE
    • Google Chrome
    • Microsoft Outlook
    • Safari
    • Visual Studio Code
    • Microsoft Word
    • Eclipse
    • TinyMCE
    • Google Docs
    • Thunderbird
    • Vim
    • Cloudron
    • Sublime Text
    • GNU Emacs
    • Opera
    • Gmail
    • LibreOffice
    • Apache OpenOffice
    • Mozilla Firefox
    • LibreOffice - Writer
    LanguageTool screenshot 1
    LanguageTool screenshot 1
    LanguageTool screenshot 2
    +2
    LanguageTool screenshot 3
    amritkarmacharyaamritkarmacharya’s note

    Although I did not use it integrated with other Softwares. Even standalone it provides very good feedback on language, grammar, and thesaurus. The UI is little laggy but the functionality makes up for it.

Comments

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Google Scholar, via Publish or Perish, has the full limit of Google Scholar of 1000 Items. Those 1000 can be sorted by "Rank", date, type of publication, name of author, number of citations, title etc. The results can be saved in many formats, Bibtex, RTF, etc and CSV (comma-separated-values), the latter useful for databases and spreadsheet. See columns G and H for original source, and who and where cited = many sources.

I still prefer using version 6 of Publish or Perish, rather than the newer version 7. Your usage may differ. https://harzing.com/blog/2017/11/publish-or-perish-version-6

Sci-hub and Library Genesis (see Wikipedia) are your friends.