Cytoscape Alternatives

Apps similar to Cytoscape include Gephi, which is free and open source. Other options are Linkurious, ikolinks, VOSviewer and NodeXL. You can choose from more than 10 Diagram Editors like Cytoscape for Windows, Mac, Linux, the web and iPad.

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Alternatives
Cytoscape alternatives page was last updated

Alternatives list

  1. Gephi icon
     61 likes

    Gephi is the leading visualization and exploration software for all kinds of graphs and networks. Gephi is open-source and free.

    51 Gephi alternatives

    Cost / License

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    Good alternative?
     
  2. Linkurious icon
     11 likes

    Linkurious provides a graph visualization and analysis platform used for fraud detection, anti-money laundering, intelligence or cybersecurity. Easy to deploy and highly extensible, Linkurious Enterprise makes it easy to uncover insights hidden in complex connected data.

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Online
    Good alternative?
     
  3. ikolinks icon
     1 like

    Explore a world of curated content, helpful resources, and exciting updates. Sign Up below to discover more about Bio Links Tool. Do everything with one platform.

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Online
    Good alternative?
     
  4.  6 likes

    VOSviewer is a software tool for constructing and visualizing bibliometric networks. These networks may for instance include journals, researchers, or individual publications, and they can be constructed based on co-citation, bibliographic coupling, or co-authorship relations.

    6 VOSviewer alternatives

    Cost / License

    • Free
    • Open Source

    Platforms

    • Mac
    • Windows
    • Linux
    Good alternative?
     
  5. NodeXL icon
     7 likes

    NodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it easy to explore network graphs. With NodeXL, you can enter a network edge list in a worksheet, click a button and see your graph, all in the familiar environment of the Excel...

    Cost / License

    • Free
    • Open Source

    Platforms

    • Windows
    • Microsoft Office Excel
    Good alternative?
     
  6. Wandora.org icon
     8 likes

    Wandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered and merging information model, multiple visualization models, huge collection of information extraction, import...

    Cost / License

    • Free
    • Open Source

    Platforms

    • Mac
    • Windows
    • Linux
    Good alternative?
     
  7. Tabnetviz icon
     4 likes

    table-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.

    Cost / License

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    • Python
    Good alternative?
     
  8. Graphia icon
     1 like

    Graphia is a powerful open source visual analytics application developed to aid the interpretation of large and complex datasets.

    Cost / License

    Platforms

    • Mac
    • Windows
    • Linux
    Good alternative?
     
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  9. GraphXR icon
     2 likes

    Kineviz GraphXR is a browser-based visualization platform for interactive analysis of big, high dimensional, and or connected data.

    Cost / License

    • Free Personal
    • Proprietary

    Application type

    Platforms

    • Mac
    • Windows
    • Linux
    • Online
    • iPad
    • Self-Hosted
    • Software as a Service (SaaS)
    Good alternative?
     
  10. Polinode icon
     6 likes

    Polinode is a tool that makes it easy to perform powerful network analysis. You can either upload your own network data or use the integrated relationship-based survey tool to collect data for you before analyzing and visualizing your networks.

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Online
    • GB flagUnited Kingdom
    Polinode screenshot 1
    Good alternative?
     
  11. Neoclipse icon
     1 like

    Neoclipse is a standalone workbench application to interact with Neo4j (database directory or server). It supports Cypher, index searches, visualisation, graph updates.

    Cost / License

    • Free
    • Open Source

    Application type

    Platforms

    • Windows
    Good alternative?
     
12 of 17 Cytoscape alternatives