Cytoscape Alternatives

Cytoscape is described as 'Open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web' and is an app in the social & communications category. There are more than 10 alternatives to Cytoscape for a variety of platforms, including Windows, Mac, Linux, Web-based and iPad apps. The best Cytoscape alternative is Gephi, which is both free and Open Source. Other great apps like Cytoscape are ikolinks, NodeXL, Wandora.org and VOSviewer.

Copy a direct link to this comment to your clipboard
Cytoscape alternatives page was last updated

Alternatives list

  1. Copy a direct link to this comment to your clipboard

    TouchGraph is the producer of data visualization software TouchGraph Navigator 2. With TouchGraph Navigator 2, users can upload data and create "interactive network visualizations."[1] Users can purchase licenses for either a TouchGraph Navigator Desktop version or...

    Cost / License

    • Paid
    • Proprietary

    Platforms

    • Windows
    • Linux
     
  2. Pathomx icon
     1 like
    Copy a direct link to this comment to your clipboard

    Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.

    Cost / License

    • Free
    • Open Source

    Alerts

    • Discontinued

    Platforms

    • Mac
    • Windows
     
  3. TextQuery icon
     Like
    Copy a direct link to this comment to your clipboard

    TextQuery is a desktop app that lets you import data file as a table, query it using SQL, and create stunning charts from those results.

    Cost / License

    • Freemium (Pay once)
    • Proprietary

    Platforms

    • Mac
    • Windows
     
  4. Kenelyze icon
     Like
    Copy a direct link to this comment to your clipboard

    Kenelyze is a visual analytics platform which allows anyone to create fully interactive network maps on the fly using any dataset.

    Cost / License

    • Subscription
    • Proprietary

    Application type

    Platforms

    • Software as a Service (SaaS)
     
  5. Socilyzer icon
     Like
    Copy a direct link to this comment to your clipboard

    Web-based tool for conducting a social network analysis: from data collection to graph visualization and analysis.

    Cost / License

    • Freemium
    • Proprietary

    Application type

    Platforms

    • Online
     
You are at page 2 of Cytoscape alternatives