Clustal X Alternatives

Clustal X is described as 'Multiple sequence alignment software' and is an app. There are eight alternatives to Clustal X for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best Clustal X alternative is AliView, which is both free and Open Source. Other great apps like Clustal X are BioEdit, Genophore, UGENE and GeneDoc.

More about Clustal X

Clustal X alternatives page was last updated Feb 3, 2023

AliView
3 likes
AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use, not so bloated and hopefully to your liking.
Cost / License
Free
Open Source
Origin
Sweden
EU
Platforms
Mac
Windows
Linux
+1
Is AliView a good alternative to Clustal X?
BioEdit
2 likes
BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.
28 BioEdit alternatives
Cost / License
Free
Proprietary
Alerts
Discontinued
Platforms
Windows
+2
Is BioEdit a good alternative to Clustal X?
Genophore
2 likes
Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.
Cost / License
Free Personal
Proprietary
Platforms
Online
Self-Hosted
Software as a Service (SaaS)
Is Genophore a good alternative to Clustal X?
UGENE
3 likes
UGENE is free open-source cross-platform bioinformatics software.
Cost / License
Free
Open Source
Platforms
Mac
Windows
Linux
+4
Is UGENE a good alternative to Clustal X?
GeneDoc
1 like
A full featured multiple sequence alignment editor, analyser and shading utility for Windows.
Cost / License
Free
Proprietary
Platforms
Windows
Is GeneDoc a good alternative to Clustal X?
Geneious
1 like
Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!
28 Geneious alternatives
Cost / License
Paid
Proprietary
Platforms
Mac
Windows
Linux
+1
Is Geneious a good alternative to Clustal X?
Clustal Omega
1 like
Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
Cost / License
Free
Proprietary
Origin
United Kingdom
Platforms
Online
Is Clustal Omega a good alternative to Clustal X?
CLC Main Workbench
Like
QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.
Cost / License
Paid
Proprietary
Origin
Germany
EU
Platforms
Mac
Windows
Linux
Is CLC Main Workbench a good alternative to Clustal X?