Pathomx has been discontinued. Similar apps include GraphPad Prism. It's paid, but Cytoscape is free. Other options are GraphXR. In total there are three Diagram Editors like Pathomx for Mac, Windows, Linux, the web and iPad.
GraphPad Prism is a powerful combination of basic biostatistics, curve fitting and scientific graphing in one comprehensive program. More than 100,000 scientists in over 100 countries rely on Prism to analyze, graph and present their scientific data.
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Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Kineviz GraphXR is a browser-based visualization platform for interactive analysis of big, high dimensional, and or connected data.
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