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Apps with 'Lossless Muxing' feature
Avidemux is a free video editor designed for simple cutting, filtering and encoding tasks. It supports many file types, including AVI, DVD compatible MPEG files, MP4 and ASF, using a variety of codecs. Tasks can be automated using projects, job queue and powerful scripting. Subler is a Mac OS X application that opens media containers, allows you to add or remove media tracks inside them, and then saves them out again. In the specialized language of the video world, Subler is a “transcoder” or “demuxer” depending on how you use it.