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Technically it works but Beyond Compare is better. Winmerge is free, but it hasn't been updated in ages. Beyond Compare has been under constant development, and it is apparent. Beyond Compare is very polished, and easy to use. Most things it does correctly right out of the box, though it's still worth looking at the menus to figure out what it's doing and not doing.
Winmerge, on the other hand, does things wrong. Once you dig through all the menus and options, you can set it up to do what you want, and it'll do a good job of it, but it's clunky and harder to see the useful information. Beyond Compare is so much better, I'd skip Winmerge even though it's free.
Beyond Compare is not free, but it has a fully-functional 30 day trial, so just use that if you only need it temporarily. If you need it longer, it's worth buying. It's really incredible.
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